Package Documentation
Introduction
What is COMETSpy?
How to use this Documentation:
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Installation
Installation of COMETS
COMETS Capabilities
Capabilities in space
Biological capabilities
Computational capabilities
Tutorials
Getting started
Preparing a model for
COMETS
Setting
COMETS
simulation parameters
Preparing a
COMETS
simulation layout
Running a
COMETS
simulation
Checking simulation output and possible errors
Accessing the results of the simulation
Growth in a test tube
Loading the COMETS Python Toolbox
Creating a test tube
Loading a model
Setting the simulation parameters
Running the simulation
Analyzing the results
Two-species competition assay
Load models and create a mutant
Create layout, add models and set up media composition
Set up simulation parameters
Run the simulation
Simulating serial transfers
Citrate utilization in the Long Term Evolution Experiment.
Crossfeeding in a chemostat
Simulating evolution
Load the model
Set up the layout
Set up simulation parameters
Run the simulation
Visualize the results
Growth of a circular colony
Growth of a branching colony
Growth and propagation of bacterial colonies on flat surfaces
Simulating growth on Petri dish
Soil-air interface
API
cometspy package
cometspy.comets module
cometspy.layout module
cometspy.model module
cometspy.params module
cometspy.utils module
Module contents
COMETSpy
Index
Index