Package Documentation
Introduction
What is COMETSpy?
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Installation
Installation of COMETS
COMETS Capabilities
Capabilities in space
Biological capabilities
Computational capabilities
Tutorials
Getting started
Preparing a model for
COMETS
Setting
COMETS
simulation parameters
Preparing a
COMETS
simulation layout
Running a
COMETS
simulation
Checking simulation output and possible errors
Accessing the results of the simulation
Growth in a test tube
Loading the COMETS Python Toolbox
Creating a test tube
Loading a model
Setting the simulation parameters
Running the simulation
Analyzing the results
Two-species competition assay
Load models and create a mutant
Create layout, add models and set up media composition
Set up simulation parameters
Run the simulation
Simulating serial transfers
Citrate utilization in the Long Term Evolution Experiment.
Crossfeeding in a chemostat
Simulating evolution
Load the model
Set up the layout
Set up simulation parameters
Run the simulation
Visualize the results
Growth of a circular colony
Growth of a branching colony
Growth and propagation of bacterial colonies on flat surfaces
Simulating growth on Petri dish
Soil-air interface
API
cometspy package
cometspy.comets module
cometspy.layout module
cometspy.model module
cometspy.params module
cometspy.utils module
Module contents
COMETSpy
cometspy package
View page source
cometspy package
cometspy.comets module
cometspy.layout module
cometspy.model module
cometspy.params module
cometspy.utils module
Module contents